The entry point of the API is the chemaxon.bioEddie function which will create BioEddie. This function requires two arguments: the dom element where the editor should be displayed and a config object. This function returns an object of which the API can be used to interact with BioEddie programmatically.
A full example describing how to embed BioEddie into a webpage with all the possible configurations is available within BioEddie's downloadable content on api-doc/index.html.