Down Wedge Orientation allows changing the wedge bond display convention. Down wedge points downward in MDL's convention, upward (at the chiral center) in Daylight's.
Any Bond Line Style offers three different modes to display bonds of unkown types: Automatic, Dashed and Solid. This option can be set separately to be used in MarvinSketch and MarvinView, respectively.
Terminal Bond Deletion Method offers two ways to delete the terminal bond of a molecule: only the bond is deleted or the terminal atom disappears along the bond.
"Coordinate" Bond Line Style allows changing the type of coordinate bonds from the default ones (arrow for single atom and hashed for multicenter) to solid.