atomSet0.1 ... atomSet0.63atomSet1.1 ... atomSet1.63... |
Atom sets. A comma-separated list of atom indices (0, ..., n -1). An atom in molecule cell number N will be in set M if its number appears in the atomSet N . M list. By default, all atoms are in set 0. |
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atomSetColor0...atomSetColor63 |
The atom set color in hex. |
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bondSet0.1 ... bondSet0.63bondSet1.1 ... bondSet1.63... |
Bond sets. A comma-separated list of atom index pairs in i - j format, where i , j = 0, ..., n -1. A bond in molecule cell number N will be in set M if the corresponding atom pair appears in the bondSet N . M list. By default, all bonds are in set 0. |
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bondSetColor1...bondSetColor63 |
The bond set color in hex. |
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<a name="src-1803642-marvinviewstructureparameters-2d"></a>clean2dOpts |
Options for 2D cleaning (0D->2D) See base 2D cleaning options |
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<a name="src-1803642-marvinviewstructureparameters-3d"></a>clean3dOpts |
Options for 3D cleaning (0D->3D) See base 3D cleaning options |
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<a name="src-1803642-marvinviewstructureparameters-dim"></a>cleanDim |
The number of space dimensions for cleaning. 2 - two-dimensional cleaning 3 - three-dimensional cleaningSee also: cleanOpts, importConv options |
2 |
<a name="src-1803642-marvinviewstructureparameters-opts"></a>cleanOpts |
Options for 2D or 3D cleaning. cleanOpts accepts the same parameter values as clean2dOpts or clean3dOpts depending on the cleaning dimension (cleanDim). |
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<a name="src-1803642-marvinviewstructureparameters-imp"></a>importConv |
Conversion(s) after molecule loading. Currently, the following options are implemented: |
"a" or "+a" |
General aromatization |
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--- |
--- |
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"a_bas" or "+a_bas" |
Basic aromatization |
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"-a" |
dearomatization |
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"H" or "+H" |
add explicit H atoms |
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"-H" |
remove explicit H atoms |
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"c" |
automatic cleaning |
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setColoringEnabled |
Atom/bond set coloring. |
true |