Design Hub history of changes

23.10.0

extended the REST API with new query parameters on the export endpoint
extended the REST API responses with miscellaneous internal IDs to simplfy using different endpoints together
fixed an issue with the REST API where API calls resulted in reducing permission of users

23.9.0

extended spreadsheet views with new configuration options
adjusted the internal logic for temporarily hidden/displayed rows
new look and feel and configuration options for design set cards in hypothesis views
fixed an issue with the save compound dialog when used in compound views

23.8.0

fixed an issue with the dashboard not displaying any content when certain permissions were disabled for a user
extended the API of realtime plugins with coloring and visualization options
improved robustness of TSV / SMILES exporter to better handle empty values
fixed icon states for filtering

23.7.0

extended Project Data screen with new calculation options
removed the previously deprecated configuration option snapshotFields
log levels can now be modified at runtime from the Admin UI

23.6.0

new features for customization of the spreadsheet
fixed an issue with starring action on hypotheses
fixed an issue with voting option's visibility for users without permission
fixed an issue where Pull reference dialog timed out
extended the REST API with several new methods to import data and customize export file format for molecules
fixed an issue with @mentioning capability on hypotheses pages, and with autocomplete of user names

23.5.0

new features available for customization of the kanban board
extended comment @mentioning capabilities
icon updates

23.4.0

new features available for customization of the kanban board
new features for spreadsheet customization
ID filtering improvements
fixed an issue with caching image assets on the frontend
fixed an issue with UI rendering updates after a change of metadata
changed the logic of displaying design set cover images

23.3.0

several screens had their look and feel updated, and configuration options moved to the top right corner
fixed an issue with batch update of compound statuses
fixed an issue with comment loading on the dashboard
fixed a frontend caching bug that led to the compound view showing incorrect results

23.2.0

extended the comment system with @mentioning capability
fixed an issue with dashboard showing file names to users without the necessary permissions
status changes are now disabled on private compounds
the SDF import dialog is now automatically checking all boxes
fixed an issue with the design set sharing dialog related to image displaying
layout fixes on the design set and admin interface

23.1.0

added new customization options to the spreadsheets and compound views
custom compound fields can now be sorted and filtered in spreadsheet views
fixed an issue with picking the chemical search type on the compounds listing page
logging improved for virtual compound ID during registration

22.21.0

changed the default sorting of the Design Hub Shared Compounds plugin to chemical similarity
added tagging, description and custom compound field setting options to the dialog when saving a new compound
fixed an issue with the dashboard's time filter
hidden several elements from the UI for users without permissions related to hypotheses and design sets

22.20.0

added row height configuration options to the spreadsheet views
added an option on the Admin page to categorize the realtime plugins into several predefined categories
replaced the icons in the application to improve contrast and increase size/line thickness consistency
fixed an issue with the hasReport flag of realtime plugins

22.19.0

altered the logic of assignee and author visibility in the application by combining it with information about record visibility
updated the look and feel of the design set listing screen
deprecated the use of the content_log database table
fixed a search issue affecting AWS RDS databases
vulnerability fixes

22.18.0

changed priority indications on the kanban board
added a missing icon to uploading a file attachment
the global support email addresses have been updated across the application
fixed an issue with the search page updating as new text searches are performed
fixed an issue with the notification panel related to synthesis updates

22.17.0

improved file attachment and comment handling in the application
added a registry history section to compound views
extended the quick suggestions of the main search bar with virtual and substance IDs of compounds in case of ambiguity
added an in-place text description editor panel to the single hypothesis and design set views
fixed an issue where plugin API provided the compound title of #NaN in certain use cases
fixed an issue where the Author was not displayed to users without the ACCESS_PROJECTS_META permission in single compound view
fixed an issue where users without ACCESS_DESIGNSET permission were able to export a design set report revealing its title

22.16.0

fixed an issue with the activity stream where it reported incorrect title for new attached files
fixed an issue with ZIP file downloads for a multi-compound selection
improved the logic of OIDC token refreshing to make sure network failures are better tolerated

22.14.0

added support for DH_ prefixed environment variables for configuration, and deprecated the ML_ prefixed ones
improved plugin configurations with a new project-object setting type
batch delete is now available in project data view
fixed an issue with too large database queries over 800+ view columns
added an option to configure SQL DB connection pool size
introduced the READ_COMMENTS, WRITE_COMMENTS, READ_DESCRIPTION, WRITE_DESCRIPTION, ACCESS_FILE_ATTACHMENT, ACCESS_COMPOUND_FIELDS_GROUP_* permissions that are given to our default user groups of TEAM_ADMIN, VIP, USER and CRO reasonably, but not for custom groups. These permissions can be used to control which users see the comment areas, file attachments, text descrption or custom data fields throughout the application and on content IDs they otherwise have access to.
improved the user listing table of the admin interface with pagination, filtering, and the groups columns now displays all groups/roles of a user
fixed an issue with reloading saved settings of realtime plugins
reorganized the full search page's options, by moving content type selection to the top, followed by project filtering and then all metadata options
extended the compoundButtons configuration option with new variables that can be added to a URL
improved the design set sharing functionality with filtering options that can quickly reveal potential issues
extended the REST API of compound selection with new filtering and querying options

22.13.0

fixed an issue with list and kanban filters refreshing after a project switch
fixed an issue with loading plugin configurations into the UI controls
added typeahead search capability to all dropdowns in the application with dynamic content, e.g. user lists
improved the logic of moving compounds between design sets
added a new option to store files related to projects

22.12.0

fixed an issue with the assignee dropdown where in some timing conditions it didn't load the potential list of all attendees
added the ability to select which reference compound to use for comparison in single compound mode and create mode
fixed an issue with the kanban board where it was not possible to update the "assignee" attribute of a record when the "Project members" axis was selected
introduced session persistence for filter configuration and selection of rows to most screens

22.11.0

an option has been added for the Project data sheet to export all or the selected records
filter options across the application have had their list of options reduced to focus on the user's current project view
the Project members option of the Kanban board had its list of possible values reduced to focus on the user's current project view
fixed an issue with showing the default properties of realtime plugins and restoring the saved values into the dialog

22.10.0

a new "Toggle hydrogens" options is available in the 3D viewer for all ligands
the Binding site and Surface components of the 3D viewer have been merged with updated size controls
the default assignee of compounds is no longer set to the compound author, but is left Unassigned
fixed an issue with the compound sharing dialog that displayed Access Denied errors whenever a registration issue was detected
compound records that are updated through import plugins now do not override the author of compounds (i.e. the original values are kept)

22.9.0

compounds can now be reorganized between private and public design sets
spreadsheet columns can now be resized in the early access spreadsheet feature
fixed an issue with the early access spreadsheet feature where # symbols were missing from the ID column
fixed an issue with storage plugins where certain organizational features of the UI didn't provide the necessary triggers
fixed a layout issue with long column names in the filter panels of Project Data
revised the calculation of completed compound statuses in statistics to consider Cancelled compounds as a finished state

22.8.0

improved the save compound dialog with navigation related options
improved the user interface of "compoundButtons" when multiple definitions are provided in the configuration file
fixed an issue with the layout of settings in plugin configuration windows
fixed an issue with the database query logic of project-focused tag lookup for compounds

22.7.0

introduced a new chemical search logic that improves the consistency of very generic chemical queries. Several configuration options are introduced to tweak the behaviour for the available hardware. See the configuration guide for details
batch editing has been added to spreadsheets
adjusted several dialogs to make sure long configuration options do not stretch the visualization
fixed an issue where duplicated data records' import progress wasn't properly indicated

22.6.0

a progress indicator has been introduced to help with long-running import processes
a new category option is added to realtime plugin settings to organize the list of options
fixed an issue with checkboxes that were rendered with incorrect (small) size

22.5.0

a new way to organize compounds has been added to design sets
improved the way the search page displays statuses available for filtering
reduced the memory usage of certain synchronization jobs
fixed an issue with compound modification process where IDs were hidden from the UI after the change took effect

22.4.0

added additional columns (e.g. tags and various IDs) to the spreadsheets of the application
added user specific persistence to choices on the import dialog
fixed an issue with company plugins that prevented the daily scheduled call of getProjects() method
fixed an issue that prevented sharing design sets with a certain status
fixed an issue with the dashboard not showing compound IDs
added a configuration option to openId authentication types that allows tweaking the timeout of downloading

22.3.0

import plugins can now add compounds created in other software as new private design compounds
project IDs are now added to the dashboard URLs
adjusted the My projects dropdown with typeahead search and quick way to clear the current selection
improved the project data and design set spreadsheets so that panel visibility is persisted for the user
fixed an issue with the push notifications of the backend during compound upload and property calculations that prevented the view from updating
adjusted the voting buttons on the project data and design set spreadsheets so that the clickable area is appropriate sized

22.2.0

adjusted the search logic of the compound and full search screens by removing the estimation logic and replacing it with a fully accurate search count as well
adjusted the health check of the application by including the output of JChem Microservices DB health and if Design Hub can reach it at the time of health check
updated the login screen of the application to make single sign-on flows smoother for all users
fixed an issue with storage plugins not triggering updates on events related to deleting a compound

22.1.0

removed the "Recently joined" cell from the dashboard
fixed an issue preventing manual status changes (to Synthesis Completed) from triggering notifications to the compound author
fixed an issue with the virtual compound cards in the Approval queue that caused it to display internal IDs of status/priority/assignee instead of corresponding labels

21.19.0

when OIDC tokens expire and cannot be refreshed anymore automatically, the application now logs out users to ensure a new valid token can be obtained
the Manage project membership screen is now hidden for users without the ACCESS_PROJECTS_META permission
Marvin JS upgraded to version 21.19.0, which requires Ctrl/Cmd+Scroll to zoom the canvas in embedded locations
the Design Hub Shared Compounds plugin has been extended with imported data visualization capabilities
adjusted the scrollability, sizing of filter panels on every screen of the application, and fixed an issue with prevented the compound kanban board's filter panel from being scrollable at certain layouts
the My Projects dropdown now allows multiselection

21.18.0

a new project data screen is now available for early access trials

21.17.0

checkCompound and getID method has been removed from company plugin, and added to a new registry plugin type, and extended with a getMatches implementation. see the new developer guide
a new approval page is available to view pending matches from the substance registry collected using registry plugin's getMatches method
realtime plugins can now be configured with new settings types: objectenum and multiobjectenum

21.16.0

storage plugin API has been extended with additional parameters. see the developer guide for details
added file based logging option next to console and gelf. see the configuration guide for details
fixed an issue with data import line matching heuristics

21.15.0

openId authenticated domains can now keep access tokens refreshed and provide user access tokens to plugin calls for authorization of requests
fixed an issue with the search pages where services configured for MarvinJS were not loaded
fixed an issue with the View registrations page where it failed to load under some circumstances
extended the manual data importing screen to allow importing status, priority, assignee and vlaues to any custom compound fields
optimized several screens to dramatically reduce number of HTTP requests, which in high latency situations improve page loading experience
fixed an issue in Synergy environments where email addresses showed for users instead of real names

21.14.0

fixed an issue with the REST API endpoint /api/public/compounds where chemical structure sources were missing
fixed an issue with optional features flickering in the application toolbar
revamped the organization and visualization of search options across all screens

21.12.0

fixed an issue with missing application icon in browser tab bar
fixed an issue with restricted access users not seeing content assigned to them under certain project-specific rules
extended the storage plugin APIs to include custom compound fields
fixed an issue with filtering data on custom compound fields

21.11.0

separated all kanban boards into a main navigation element
added number of days since a compound has been at the current status to the compound kanban board
changed all kanban boards to display the assignee in the corner, instead of the author
changed all kanban boards to display “None” columns by default – so records with missing details are not hidden initially
changed the visualization of user names throughout the application, so that authors are in a rectangle shape with full name, while assignees are in a circlular avatar with initials
compound list view has now a sorting dropdown in the corner which allows putting e.g. most voted compounds at the top
fixed an issue with compound kanban boards which prevent cards from being fully draggable – dragging only worked by title, now the entire surface is draggable
fixed an issue with single step reaction analysis that prevented the component panel from appearing below the compound editor

21.10.0

storage plugins APIs have been upgraded and additional compound details can be exported with them. see the developer guide for details
realtime plugins have been upgraded and now all method calls provide full user context. see the developer guide for details
fixed an issue with saving compounds to a public design set when permission checks are enabled
added flavor text to an empty search results page to help navigate the application
fixed an issue where scrollbars were not visible in compound creation screen even though content overflowed the screen
greatly increased the timeout of virtual registrations and added additional helpful text to diagnose and handle performance related issues

21.9.0

compounds in a design set can now be sorted based on author, assignee, priority, status and create date
compounds in the system can now be sorted based on the total number of votes
fixed an issue with protein surfaces not rendering on page load
adjusted the visibility of form input labels in compound saving dialogs and plugin configuration dialogs to increase ease of use

21.8.0

replaced starred item counting (introduced in 20.6.x) with an up/down voting capability
added a notification panel showing recently synthesized compounds
the tags of items now receive their autocomplete suggestions from within the project only
fixed an issue where chemical structures on hypothesis were not searchable
added a paging option to the /api/compounds/public endpoint (see API docs)

21.4.1

added a SQL backend option for the attachment filestore of the application (see filestoreImplementation in the configuration guide)
made the startup of the application more robust by waiting and retrying the SQL connection until it succeeds or times out
added the ability to configure username and displayName attributes pulled from OpenIDConnect authentication source
added Kerberos token support to LDAP authentication type
added Project as a realtime plugin setting type

21.3.0

backend of the application has been upgraded to NodeJS 14 LTS
REST API access now requires the ACCESS_REST_API permission (see configuration guide)
virtual registry plugin is now available to search the internal database of Design Hub while designing new compounds
conditional formatting of realtime plugin results is now available (see developer guide)
Marvin JS upgraded to v21.3.0

21.1.0

single compound view now has a description field with rich text support, and the kanban board has been extended so that mouse over tooltips of compounds display these compound descriptions
fixed an issue with tag creation which prevented showing case insensitive matches from being displayed
added OpenIDConnect support to the authentication options to work with Keycloak or Auth0
fixed an issue with accessing the SAML service metadata descriptor endpoint, as a result of it, the URL of it changed. for details please see the configuration guide

20.21.1

resolver plugins can now by used on the hypothesis sketcher
quick search in the toolbar now finds compounds by virtual IDs after synthesis completed (and real corporate IDs have be assigned)
fixed an issue with the hypothesis sketcher were drawing arrows was not possible from right to left
fixed an issue with the single compound view where the list of compounds could be infinitely scrolled
changed the logic associated with tag filtering such that space characters within your tag (during a search) do not result in 2 partial query conditions
fixed an issue with uploading plain text files that cannot be categorized by the browsers into any mime type
adjusted the look and feel of filtering and sorting options in design set overviews for easier access

20.20.0

fixed an issue with plugins implementing the realtime plugin REST API not being available in overview mode
fixed an issue with realtime plugin settings where the dialog didn't show saved settings when reopening the dialog
added a new screen to the administrative UI that shows an entire audit history of the virtual registry

20.19.0

increased the default expiry of uploaded structure files from 5 minutes to 2 hours
added the ability to upload multiple file attachments using the same desktop file selection dialog
added the ability to edit and delete comments for 10 minutes, or until a response is made by others

20.18.0

fixed an issue with editing and deleting banner messages on the admin UI
improved the layout of kanban boards to display a white dropzone while dragging an item

20.16.0

added a new role based access control system to the application that allows assigning users to groups, and limiting what actions are permitted for these groups. For details please see the configuration guide
adjusted the absolute time displayed in tooltips to always include calendar year
improved the layout of kanban boards to keep row and column headers in the view while scrolling
fixed an issue where the value of a text filter is not displayed in the text field after reloading a search page
fixed an issue where PowerPoint documents generated by the application, opened in JChem for Office displayed a warning while editing
changed the rendering method of plugin documentations from plain text to HTML. For details please see the respective developer guides
changed the URL scheme used by the structure upload API. For details please see the REST API documentation

20.13.7

replying to comments is now available
fixed an issue where small bar charts in the card layout overlapped text when only a few data fields were selected for visualization

20.11.0

with the retirement of JChem Web Services Classic, Design Hub now requires JChem Microservices DB, IO, Structure Manipulation and Markush Enumeration modules, so new configuration options have been created to configure the location of these modules. For details please see the configuration guide

20.10.0

adjusted the layout of hypotheses editing on small screens
hypothesis pages can now be reordered by drag & dropping them
AWS S3 based filestore is now available using the filestoreImplementation option. For details please see the configuration guide
improved the performance of file attachments across the application by generating and loading thumbnails of images where possible
the admin area now supports changing JChem Microservices DB molecule type and forcing the resyncronization of PostgreSQL content to JMS DB if needed
users can now register API keys to access the applications's public API. For details please see the API documentation
Design Hub has been upgraded to NodeJS v12 which delivered higher performance and easier memory configuration. For details please see the NodeJS release news
fixed an issue where an admin flash message / banner has overlapped content in the application
fixed an issue where a freshly created compound tag was not visible in the list of autocomplete suggestions on subsequent tag creation
fixed an issue where the compound list didn't properly display the priority of each compound
MarvinJS updated to 20.8.0

20.6.7

plugins now display short error messages straight from the problem source if the results cannot be fetched to prevent displaying inconsistent results or empty screens when an error occurred
compounds can now be starred (watched) in all views to easily gather updates made on them
improved the error messages displayd during design set sharing
adjusted the layout of large kanban boards so that column headers stick to the top of the screen
search results can now be paged based on the number of estimated hits
fixed an issue where an unordered SQL query mixed up the result of design set sharing
dropped the /databases volume declaration of the docker image of Design Hub

20.4.4

an administrative panel is now available where configuration of content statuses, Marvin JS toolbar details, JChem Microservices addresses and user flash messages / banner messages can be configured
from this version anonymous daily aggregate statistics are now collected in a PostgreSQL database schema called usage. Migration from the previous JSON file store is handled automatically by the database-migrator module
fixed an issue where deleted compounds were counted in the statistics of a design set
adjusted the layout so that virtual / real compound IDs no longer overlap with portions of the compound 2D image
MarvinJS updated to v20.4.0

20.3.1

a dashboard is now available as the starting page of the application with latest designs, latest comments and updates from projects you track
it is now possible to load plugins from remote sources where the plugins implement a simple REST API matching the concepts of previous NodeJS plugins. For details, please see the respective developer guides

20.1.3

from this version PostgreSQL database schemas are used to store data corresponding to a domain configured in Design Hub. The migration from the public schema is automatically handled by the database-migrator module, but if the pre-programmed conditions are not met, instructions will be printed in the console
fixed an issue where periodic check in the external registry only processed the first compound of a batch
active session data is now stored in a PostgreSQL database schema called session

19.26.8

search page now displays an estimated number of records matching the configured criteria

19.25.0

clicking on a compound in a design set's overview now loads the single compound view, instead of the editor
added large floating tooltips to kanban boards with additional details of a hypothesis and design set
improved the labels on the docker images to help manage them

19.23.3

added a single compound view with attachments, tagging, a discussion board and a way to view all calculated data

19.22.3

fixed an issue where hypothesis / design set tags couldn't be removed using the kanban boards
fixed an issue where hypothesis lists displayed cached images instead of up-to-date versions
fixed an issue where old versions of MarvinJS were loaded in the browser after an update

19.21.0

initial release