- Standalone Applications
- BioEddie
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- Quick Start Guide
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- Login
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- Bulk Upload
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- Search
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- Appendix A. Calculations
- Appendix B. Markush Structures
- Multi-Component compounds
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- Configuration Guide
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- Compound Registration FAQ
- Compound Registration System Requirements
- Compound Registration History of Changes
- API documentation
- Instant JChem
- Instant Jchem User Guide
- Getting Started
- IJC Projects
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- Collaboration
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- Building a relational form from scratch
- Building more complex relational data models
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- Filtering items using roles
- Lists and Queries management
- Query building tutorial
- Reaction enumeration analysis and visualization
- SD file import basic visualization and overlap analysis
- Using Import map and merge
- Using Standardizer to your advantage
- Pivoting tutorial
- Instant JChem Administrator Guide
- Admin Tool
- IJC Deployment Guide
- Supported databases
- JChem Cartridge
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- Deployment via Java Web Start
- Startup Options
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- Instant JChem Meta Data Tables
- Test to Production Metadata Migrator
- Filtering Items
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- Reporting a Problem
- Manual Instant JChem schema admin functions
- SQL Scripts for Manual Schema Upgrade
- Database Row Level Security
- JccWithIJC
- Instant JChem Developer Guide
- Working With IJC Architecture
- IJC API
- Groovy Scripting
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- Schema and DataTree Scripts
- Simple SDF Exporter
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- CDX File Importer
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- Markush DCR Structures Exporter
- Select Representative Member of Clusters
- Table Standardizer
- Populate a Table with Microspecies
- Create a Diverse Subset
- Pearson Linear Correlation Co-efficient Calculator
- PDF Trawler
- Simple Substructure Search
- Intersecting Sets
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- Importing Multiple SDF Files
- Calling External Tools
- Create Relational Data Tree
- Forms Model Scripts
- Button Scripts
- Execute Permanent Query
- Patent Fetcher Button
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- Import or Export a Saved Query SDF Button
- Back and Next Buttons
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- Simple Structure Checker Button
- Advanced Structure Checker Button
- Calculate MolWeight and generate SMILES
- Get Current User
- Simple ChemicalTerms evaluator
- Edit Molecule Button
- TanimotoMultiple
- Execute Permanent Query Based On Its Name
- Open existing view in the same dataTree
- Export selection to file
- Generate random resultset from actual resultset
- Form Scripts
- Groovy Scriptlets
- Buttons vs Scripts
- Creating New Entities
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- Evaluator
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- Adding an Edge to a Data Tree
- Exporting Data to a File
- Connect to an External Database
- Create a New ChemTerm Field
- Create a New Dynamic URL Field
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- Java Plugins
- IJC Plugin Quick Start
- IJC Hello World Plugin
- IJC Plugin tutorial - MyAddField plugin
- IJC Plugin tutorial - MyMathCalc plugin
- IJC Plugin tutorial - Renderer Example
- IJC Plugin tutorial - MySCServer webapp
- IJC Plugin tutorial - MySCClient plugin
- IJC Plugin tutorial - Canvas widget
- Java Plugins and Java Web Start
- Instant JChem FAQ
- Instant JChem Installation and Upgrade
- New Features
- New Features in IJC Q4 2020
- New Features in IJC Q3 2020
- New Features in IJC Q2 2020
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- New Features in IJC Q3 2019
- New Features in IJC Q2 2019
- New Features in IJC Q1 2019
- New Features in IJC Q4 2018
- New Features in IJC Q3 2018
- New Features in IJC Q2 2018
- New Features in IJC Q1 2018
- New Features in IJC Q4 2017
- New Features in IJC Q3 2017
- New Features in IJC Q2 2017
- New Features in IJC Q1 2017
- New Features in IJC Q4 2016
- New Features in IJC Q3 2016
- New Features in IJC Q2 2016
- New Features in IJC Q1 2016
- New Features in IJC Q4 2015
- New Features in IJC Q3 2015
- New Features in IJC Q2 2015
- New Features in IJC Q1 2015
- Instant JChem Licensing
- IJC Getting Help and Support
- Instant JChem System Requirements
- Instant JChem History of Changes
- Instant Jchem User Guide
- Markush Editor
- Design Hub
- History of changes
- Install guide
- Configuration guide
- Plugin Catalogue
- Developer guide - REST API
- Developer guide - resolver plugins
- Developer guide - real time plugins
- Developer guide - real time plugin templates
- Developer guide - export plugins
- Developer guide - storage plugins
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- Developer guide - theme customization
- Install guide - Kubernetes
- Marvin Live
- User guide
- History of changes
- Install guide
- Configuration guide
- Plugin Catalogue
- Developer guide - sending data
- Developer guide - resolver plugins
- Developer guide - real time plugins
- Developer guide - export plugins
- Developer guide - theme customization
- Developer guide - storage plugins
- Developer guide - real time plugin templates
- Migration guide
- Cloud deployment
- Marvin Desktop Suite
- MarvinSketch
- User Guide
- Getting Started
- Graphical User Interface
- Working in MarvinSketch
- Structure Display Options
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- Drawing Reactions
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- Marvin OLE User Guide
- Appendix
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- Developer Guide
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- MarvinView
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- Marvin Desktop Suite History of Changes
- Marvin Desktop Suite Licensing
- MarvinSketch
- Molconvert
- Plexus Connect
- Plexus Connect - Quick Start Guide
- Plexus Connect - User Guide
- Plexus Connect - Log in
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- Plexus Connect - Exporting Your Data
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- Plexus Connect - Browsing in Your Data Set
- Plexus Connect - Selecting Data
- Plexus Connect - Searching in Your Database
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- Plexus Connect - List Management
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- Plexus Connect - Sharing Data with Other Users
- Plexus Connect - Charts View
- Plexus Connect - R-group Decomposition
- Plexus Connect - Administrator Guide
- Plexus Connect - Authentication
- Plexus Connect - Sharing Schema Items Among Users
- Plexus Connect - Business Flags
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- Plexus Connect - Shared data sources
- Plexus Connect - Plexus storage
- Plexus Connect - Configuration Files
- Plexus Connect - Simple table
- Plexus Connect - Getting the Plexus Backend and Frontend Log Files
- Plexus Connect - Form Editor
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- Plexus Connect - Deploying Spotfire Middle Tier solution
- Plexus Connect - Installation and System Requirements
- Plexus Connect - Licensing
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- Plexus Connect - FAQ
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- Plexus Connect - History of Changes
- Plexus Connect - Schema Refresh Without Restart
- Zosimos
- Toolkits and Components
- AutoMapper
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- Introduction to Calculator Plugins
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- Background materials
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- Generate3D
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- NMR model prediction
- pKa calculation
- Red and blue representation of pKa values
- Tautomerization and tautomers
- Validation results
- Tautomerization and tautomer models of ChemAxon
- Theory of aqueous solubility prediction
- The tautomerization models behind the JChem tautomer search
- Calculators performance reports
- Calculator Plugins Licensing
- Calculator Plugins FAQ
- Calculator Plugins Getting Help and Support
- Calculator Plugins History of Changes
- Calculator Plugins System Requirements
- Biomolecule Toolkit
- ChemAxon Synergy
- ChemAxon Synergy User Guide
- ChemAxon Synergy Developer Guide
- ChemAxon Synergy Administrator Guide
- Chemaxon Synergy History of Changes
- Document to Structure
- JChem Base
- JChem Base Administration
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- JChem Base User's Guide
- Query Guide
- Search types
- Similarity search
- Query features JCB
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- Special search types
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- General search options
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- Reaction specific search options
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- Tautomer search - Vague bond search - sp-Hybridization
- Standardization JCB
- Hit display-coloring
- Appendix JCB
- Matching Query - Target Examples
- jcsearch Command Line Tool
- jcunique Command Line Tool
- Homology Groups in Markush Structures
- Query Guide
- JChem Base FAQ
- JChem Base History of Changes
- JChem Base Getting Help and Support
- JChem Base Licensing
- JChem Choral
- JChem Oracle Cartridge
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- Getting Started JChem PostgreSQL Cartridge
- JChem PostgreSQL Cartridge Manual
- Second Generation Search Engine
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- JChem PostgreSQL Cartridge History of Changes
- JChem PostgreSQL Cartridge Getting Help and Support
- JChem PostgreSQL Cartridge Licensing
- Comparison of JChem PostgreSQL Cartridge and JChem Oracle Cartridge
- Migration Guide
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- JKlustor
- Markush Tools
- Marvin JS
- User Guide
- Getting Started
- Editor Overview
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- User Guide
- Name to Structure
- Reactor
- Reactor User's Guide
- Introduction to Reactor
- Reactor Getting Started
- Reactor Concepts
- Reactor Examples
- Working with Reactor
- Specifying Reactions
- Specifying Reactants
- Reaction Mapping
- Reaction Rules
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- Running Reactor
- Reactor Interfaces
- Reactor Application
- Reactor Command-line Application
- Reactor in Instant JChem
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- Reactor in KNIME
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- Reactor in Plexus Suite
- API, Web Services
- Glossary
- Reactor FAQ
- Reactor Licensing
- Reactor Getting Help and Support
- Reactor History of Changes
- Reactor Configuration Files
- Reactor User's Guide
- Screen
- Standardizer
- Standardizer User's Guide
- Standardizer Introduction
- Standardizer Getting Started
- Standardizer Concepts
- Working with Standardizer
- Standardizer Actions
- Add Explicit Hydrogens
- Alias to Atom
- Alias to Group
- Aromatize
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- Contract S-groups
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- Convert to Enhanced Stereo
- Create Group
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- Expand S-groups
- Expand Stoichiometry
- Map
- Map Reaction
- Mesomerize
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- Remove Absolute Stereo
- Remove Atom Values
- Remove Attached Data
- Remove Explicit Hydrogens
- Remove Fragment
- Remove R-group Definitions
- Remove Stereo Care Box
- Replace Atoms
- Set Absolute Stereo
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- Strip Salts
- Tautomerize
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- Unmap
- Wedge Clean
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- Standardizer Transform
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- Creating a Configuration Standardizer
- Interfaces Standardizer
- Standardizer File Formats
- Standardizer Actions
- Standardizer Developer's Guide
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- Standardizer Licensing
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- Standardizer History of Changes
- Standardizer User's Guide
- Structure Checker
- Structure Checker User's Guide
- Introduction
- Structure Checker Getting Started
- Structure Checker Concepts
- Working with Structure Checker
- Checker List
- Abbreviated Group StrCh
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- Alias
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- Bond Angle
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- Brackets
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- Covalent Counterion
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- Custom Checkers and Fixers
- Double Bond Stereo Error
- EZ Double Bond
- Empty Structure
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- Incorrect Tetrahedral Stereo
- Isotope
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- Molecule Charge
- Multicenter
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- Multiple Stereocenter
- Non-standard Wedge Scheme
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- OCR Error
- Overlapping Atoms
- Overlapping Bonds
- Pseudo Atom
- Query Atom
- Query Bond
- Racemate
- Radical
- Rare Element
- R-atom
- Reacting Center Bond Mark
- Reaction Map Error
- Relative Stereo
- R-group Attachment Error
- R-group Bridge Error
- R-group Reference Error
- Ring Strain Error
- Solvent
- Star Atom
- Stereo Care Box
- Stereo Inversion Retention Mark
- Straight Double Bond
- Substructure
- Three Dimension 3D
- Unbalanced Reaction
- Unused R-group Reference
- Valence Error
- Valence Property
- Wedge Error
- Wiggly Bond
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- Creating a Configuration StrCh
- Interfaces StrCh
- Checker List
- Structure Checker Developer's Guide
- Structure Checker Installation and System Requirements
- Structure Checker Licensing
- Structure Checker Getting Help and Support
- Structure Checker History of Changes
- Structure Checker User's Guide
- Structure to Name
- Third-party Integration
- JChem for Office
- Before Using
- Supported Versions
- Installation
- Administration
- Diagnostic Tool
- JChem for Excel User's Guide
- JChem for Excel Ribbon
- Working with Structures in Excel
- Add a Structure to a Cell
- Edit a Structure in a Cell
- Edit Structures in the Task Pane
- Resize Structures
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- Show and Hide Structures
- Show and Hide Structures and Structure IDs
- Insert Single Structures
- Open Structure Files
- Delete Structures from a Selected Range
- Save Single Structure to a File
- Print Structures
- Copy and Paste with JChem for Excel
- Convert from Structures
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- Convert ISIS, ChemDraw, Accord, and Insight for Excel Files to JChem for Excel Files
- Calculations with Third-Party Services
- Specify External Image and Name Services
- Importing from Databases in JChem for Excel
- Manage Connections
- Add an Oracle Connection in JChem for Excel
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- Favorite Entities in JChem for Excel
- Edit and Delete Connections in JChem for Excel
- Import from Database in JChem for Excel
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- Import from Database by IDs
- Manage Connections
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- Import from File
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- Share Excel Files
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- R-group Decomposition in JChem for Excel
- SAR Table Generation
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- Options in JChem for Excel
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- Use Custom Chemical Functions
- Functions Reference
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- Isomers in JChem for Excel
- Naming
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- Solubility
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- Image
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- Checking DirectX Information
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- Add an Oracle Connection in JChem for Office
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- Favorite Entities in JChem for Office
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- Import from Database in JChem for Office
- Import from IJC Database
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- Options in JChem for Office
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- Switching JChem for Office to Lite Mode
- JChem for Office Lite User's Guide
- JChem for Office Known Issues
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- KNIME Nodes
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- Cross Product Documentation
- ChemAxon Configuration Folder
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- File Formats
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- Document formats
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- Name
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- Tripos SYBYL MOL and MOL2 formats
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- Input and Output System
- License Management
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- Scientific Background
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- Iterator Factory
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- MarvinSpace
- MarvinSpace User's Guide
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- Metabolizer
- Plexus Suite
- Quick Start Guide - Plexus Suite
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