Visualizers tab that applies to Ligands, MacroMolecules, Water and Ions, and sets the following properties:
| Parameter | Description |
|---|---|
| Ball radius | Size of atom spheres in Ball draw type, measured in Angstroms. |
| Bond radius | Size of bond cylinders in Ball and Stick draw type, measured in Angstroms. |
| Stick radius | Size of bond cylinders in Stick draw type, measured in Angstroms. |
| Line width | Width of bonds in wire mode. |
| Double bond distance | Gap between two lines/sticks representing a double bond. It is determined as a percentage of Bond radius. |
| Double bond width | Thickness of line/stick representing a double bond. It is expressed relative to the thickness of a single bond. |
| Display bond order | When checked double bonds are drawn by two line segments, otherwise all bonds are represented as single bonds. Future releases will introduce drawing mode for triple and aromatic bonds too. |
| vdW scaled balls | When checked atom spheres in Ball and Ball-and-Stick modes are scaled according to their van der Waals radii. Otherwise all atoms (apart from hydrogen) are represented by uniform sphere radii. Hydrogen radius is half of atom radius. |
| Smooth colored sticks | When checked bi-colored stick bonds are colored gradually from one color to the other (in CPK atom coloring mode). Otherwise the two halves are draw with the two different colors. |