Checker searches for bonds NOT matching the following rules:
* Triple bond angle 180° (± 0.5 rad): | |
---|---|
* Double bond angle 120° or 180° (± 0.5 rad): | |
* sp2 atom's bond angles 120°: | |
* sp3 atom's bond angles 90° or 3 bond angles 120°, 4th bond of an angle of n times 15°; or a bond angle of 120° and two adjacent angles equal: |
Fixers:
offers cleaning the structure by:
2D clean or (clean
);
partial clean (partialclean
)
Example :
Bond Angle Checker (bondangle ) |
Warning: | Fix |
---|---|---|
Clean (clean ) |
||
Detect Bond Angle errors |
{primary} The current version of bond angle checker examines chain bonds of 2D molecules. Envelope-shaped cyclic compounds are considered as error and partial clean is not available.