Running the Biomolecule Toolkit Container

The examples for running the Biomolecule Toolkit container are shown here.

• Running with MySQL on localhost:3306 having database with name bioreg, with local license file *

docker run \
    --name=bmt \
    -p 8080:8080 \
    -v /path/to/license_dir:/data/bioreg-home \
    -e CHEMAXON_LICENSE_URL=/data/bioreg-home/license.cxl \
    -d \
    hub.chemaxon.com/cxn-docker-release/chemaxon/biotoolkit:19.4.0-0.6.0-dfee79db 

• Running with MySQL on remote host with license file on a file server *

docker run \
    --name=bmt \
    -p 8080:8080 \
    -e CHEMAXON_LICENSE_URL=http://my.license.server/bmt/license.cxl \
    -e DB_URL=jdbc:mysql://my.remote.mysql.host:3306/bmt_db_name?autoReconnect=true&useUnicode=yes&characterEncoding=UTF-8
    -e DB_USERNAME=bmt_db_user
    -e DB_PASSWORD=bmt_db_user_password
    -d \
    hub.chemaxon.com/cxn-docker-release/chemaxon/biotoolkit:19.4.0-0.6.0-dfee79db

• Running with HTTPS *

docker run \
    --name=biotoolkit \
    -p 8443:8443 \
    -v /path/to/license_dir:/data/bioreg-home \
    -e CHEMAXON_LICENSE_URL=/data/bioreg-home/license.cxl \
    -e spring_profiles_active=enforce-https \
    -v /path/to/keystore_dir:/data/keystore_dir \
    -e SERVER_SSL_KEYSTORE=/data/keystore_dir/.keystore \
    -e SERVER_SSL_KEYSTOREPASSWORD=my_ssl_keystore_password
    -d \
    hub.chemaxon.com/cxn-docker-release/chemaxon/biotoolkit:19.4.0-0.6.0-dfee79db