This menu allows changing the type of a bond, and makes bond properties available like bold, topology, reacting center and many more.
Type > Single | ![]() |
Changes the selected bond type to Single. |
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Type > Double | ![]() |
Changes the selected bond type to Double. |
Type > Triple | ![]() |
Changes the selected bond type to Triple. |
Type > Aromatic | ![]() |
Changes the selected bond type to Aromatic. |
Type > Single Up | ![]() |
Changes the selected bond type to Single Up. (Active only in 2D.) |
Type > Single Down | ![]() |
Changes the selected bond type to Single Down. (Active only in 2D.) |
Type > Single Up or Down | ![]() |
Changes the selected bond type to Single Up or Down. |
Type > Double Cis or Trans | ![]() |
Changes the selected bond type to Double Cis or Trans. |
Type > Double C/T or Unspec | ![]() |
Changes the selected bond type to Double Cis/Trans or Unspec. |
Type > Single or Double | ![]() |
Changes the selected bond type to Single or Double. |
Type > Single or Aromatic | ![]() |
Changes the selected bond type to Single or Aromatic. |
Type > Double or Aromatic | ![]() |
Changes the selected bond type to Double or Aromatic. |
Type > Any | ![]() |
Changes the selected bond type to Any. |
Type > Coordinate | ![]() |
Changes the selected bond type to Coordinate. |
Bold | ![]() |
Changes the selected bond to Bold. See details on bond tool application. |
Hashed | ![]() |
Changes the selected bond to Hashed. |
Topology > None | ![]() |
Unsets the bond topology property. |
Topology > In Ring | ![]() |
Sets a bond property so that when the molecule is used as a query, the specified bond must be in a ring to score a hit. |
Topology > In Chain | ![]() |
Sets a bond property so that when the molecule is used as a query, the specified bond must be in a chain to score a hit. |
Reacting Center > None | ![]() |
Unsets reacting center query feature of the selected bond. |
Reacting Center > Center | ![]() |
Sets reacting center query feature on the selected bond: the bond takes part in the reaction. |
Reacting Center > Make or Break | ![]() |
Sets reacting center query feature on the selected bond: the bond is created or disappears in the reaction. |
Reacting Center > Change | ![]() |
Sets reacting center query feature on the selected bond: the bond remains in the reaction, but its bond type changes, for example from single to double. |
Reacting Center > Make and Change | ![]() |
Sets reacting center query feature on the selected bond: currently it works exactly as Center. |
Reacting Center > Not Center | ![]() |
Sets reacting center query feature on the selected bond: the bond must not change in the reaction. |
Stereo Search | ![]() |
Uses stereo configuration of the specified double bond when this molecule is used as a query. |
Align > Horizontally | Alters the molecule so that the selected bond is oriented horizontally. | |
Align > Vertically | Alters the molecule so that the selected bond is oriented vertically. | |
Ligand order | Changes the order of the attachment of R-group ligands. | |
Edit Properties | Bond properties can be edited from this menu. |