In this document the reaction specific search options are summarized and their usage is shown in different search interfaces.
Reaction search handling of unpaired maps
| #### Reaction search handling of unpaired maps Specifies option for matching unpaired (orphan or widow) atom maps to any atom. True, if in reaction search unpaired (orphan and widow) atom maps can match any atom map. |
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MolSearch API MolSearchOptions searchOptions = new MolSearchOptions(SearchConstants.SUBSTRUCTURE); searchOptions.setReactionUnpairedMapMatching( SearchConstants.REACTION_UNPAIRED_MAP_MATCHES_ALL / SearchConstants.REACTION_UNPAIRED_MATCHES_UNPAIRED_ONLY ); // ... MolSearch searcher = new MolSearch(); searcher.setSearchOptions(searchOptions);Default value is SearchConstants.REACTION_UNPAIRED_MAP_MATCHES_ALL. JChemSearch API JChemSearchOptions searchOptions = new JChemSearchOptions(SearchConstants.SUBSTRUCTURE); searchOptions.setReactionUnpairedMapMatching( SearchConstants.REACTION_UNPAIRED_MAP_MATCHES_ALL / SearchConstants.REACTION_UNPAIRED_MATCHES_UNPAIRED_ONLY ); // ... JChemSearch searcher = new JChemSearch(); searcher.setSearchOptions(searchOptions);Default value is SearchConstants.REACTION_UNPAIRED_MAP_MATCHES_ALL. JChem Oracle CartridgeUse the jc_compare operator with reactionUnpairedMap:all/unpairedOnlyjcsearch command line toolUse the following command line parameter:--reactionUnpairedMap:all/unpairedOnly |
| See the availability of the option in further ChemAxon products: InstantJChem JChem for Excel * Plexus Suite Home |