addRemoveHatomsEnabled |
Add/Remove Explicit Hydrogens is enabled or disabled in the Structure menu. It will be disabled if this parameter is false. |
true |
atomStrings |
Comma-separated list of string type atom properties to be enabled. alias - atom aliases pseudo - pseudoatoms smarts - SMARTS query atom string value - atom valuesExample: "smarts". |
|
<a name="src-5317195-displayparameters-auto"></a>autoscale |
How to display a loaded molecule: "true" - fit to the applet's window "false" - use default scaling |
false |
bondDraggedAlong |
Bond in hand is visible (true) or not (false). This option can also be set on the Edit / Preferences / MarvinSketch panel. |
true |
<a name="src-5317195-displayparameters-custom"></a>customizationEnabled |
Specifies whether an end-user can customize the user interface. Setting this parameter to false disables the View/Customize dialog and the View/Configurations menu. |
true |
dispQuality |
Display quality. 0 - low quality, faster rendering 1 - high quality (antialiasing), slower rendering |
1 |
elements |
Comma-separated list of allowed elements (H, He, Li, ...). All elements in an atomic number interval can be specified with the short X-Y notation. Example: "B-F,P-Cl". Here B-F is equivalent to B,C,N,O,F. |
H-Ha |
extraBonds |
Comma-separated list of extra bond types. By default (if extraBonds parameter is not set) all the bond types are displayed. To switch off all the bonds except the defaults (Single, Double, Triple) user has to set the extraBonds parameter to an empty String. In any other cases, all the bond types to be displayed have to be listed in the extraBonds parameter besides the default bond types. bold_single - Bold single bond arom - Aromatic bond any - Any bond 1or2 - "Single or Double" query bond aromany - "Single or Aromatic" and "Double or Aromatic" query bond types topology - "Chain" and "Ring" bonds (in molfiles) wedge - Up and Down stereo wedge bonds either - "Up or Down" and "Cis or Trans" ctu - "Cis or Unspecified" and "Trans or Unspecified" coordinate - Coordinate bondExample: "arom,wedge". See also: Query properties in molecule file formats |
|
marginSize |
width of margin in pt |
0.8 |
molbg |
Molecule background color in hexadecimal value. Sets the background color of the molecule canvas. |
#ffffff |
moreEnabled |
Enable/disable the Periodic System also called More button. |
true |
queryAtoms |
Comma-separated list of query atoms and properties. any - any atom ("A" in molfile, "" in SMARTS), arom - aliphatic and aromatic, ("a" and "A" in SMARTS), conn - total number of connections, ("X" in SMARTS), H - total number of hydrogens, ("H" in SMARTS), hetero - heteroatom ("Q" in molfile, "[!C!H]" in SMARTS), list - atom list, notlist - atom 'NOT' list, Rgroup - Rgroups, rings - "R" in SMARTS, srs - smallest ring size, "r" in SMARTS, val - valence, "v" in SMARTS,Example: "list,notlist". See also: Query properties in molecule file formats |
|
reactionSupport |
Enables/disables reaction arrow drawing. |
true |
simpView |
Visibility of the currently used bond at the mouse cursor. |
|
sketchArrowHeadLength |
Length of the displayed arrow head in Angstroms. It only affects graphical arrows. |
0.8 |
sketchArrowHeadWidth |
Width of the displayed arrow head in Angstroms. It only affects graphical arrows. |
0.5 |
sketchArrowTailLength |
Length of the displayed arrow tail in Angstroms. It only affects graphical arrows. |
0.8 |
sketchArrowTailWidth |
Width of the displayed arrow tail in Angstroms. It only affects graphical arrows. |
0.5 |
statusBar |
Enable the status bar. |
false |
<a name="src-5317195-displayparameters-tmpls"></a>tmpls0 tmpls1 tmpls2 ... |
The format of this parameter is : name : file , where name is the template set name, file is the sdf or cssdf file containing the template structures. The file can be optionally compressed with GZIP (Java >= 1.1). A template molecule is automatically converted to 2D if the mol2dcmd field contains one of the following values: z=0 - for trivial conversion, clean - for sophisticated 2D cleaning.For automatic 3D conversion, the value of the mol3dcmd field must be clean - for sophisticated 3D cleaning.Templates may have abbreviations if the abbreviation* fields are specified. |
click here |
<a name="src-5317195-displayparameters-tt"></a>ttmpls0 ttmpls1 ttmpls2 ... |
Templates to be displayed on the template toolbar. Same as tmpls but these template groups will also appear on the template toolbar by default. |
click here |
template.2d |
Enables (true) or disables (false) to change the visible template groups on the Advanced Templates Toolbar. When enabled, the visibility of all template groups can be altered using the Template Library. |
true |
templateToolbarCustomizable |
Enables (true) or disables (false) to change the visible template groups on the Advanced Templates Toolbar. When enabled, the visibility of all template groups can be altered using the Template Library. |
true |
isMyTemplatesEnabled |
To avoid the lookup for marvin.mytemplates file and disable the usability of the My templates on template toolbar set this property to false. |
true |
transferButtonIcon |
Sets the location of a custom icon for the Transfer action. |
|
transferButtonText |
Sets custom text for the Transfer action. |
|
transferButtonVisible |
Makes the Transfer button visible on the General Toolbar. |
false |
viewonly |
Visualization mode: hide editing buttons; "true" or "false". |
false |
verticalbar |
Deprecated. |
|
<a name="src-5317195-displayparameters-x"></a>xtmpls |
File containing extra templates. Extra templates are placed beside the normal templates and they appear on the template toolbar by default. (see tmpls). |
|
2dviewerEnabled |
Enable (true) or disable(false) 2D viewer |
true |
3dviewerEnabled |
Enable (true) or disable(false) 3D viewer |
true |