Service type: Local Services
Java Archive (JAR) : Browse the JAVA Archive file, which contains the classes of the desired calculation;
Select a function : The JAR file may contain more calculation implementations; browse and select the relevant class and method;
Fill in the required fields:
Type : The type of the parameter(s) defined in JAVA method's signature;
Name : Name of the input parameter(s). Give a name, if it is not defined in the relevant JAR
file;
Evaluation : Specify how the parameters are passed to the service. Select from the drop-down list:
Chemical Terms: Evaluate the given Chemical Terms expression on the input molecule and pass the evaluation result to the service as parameter;
Active molecule: The service will use the active molecule of MarvinSketch for the calculations;
Active selection: The service will use the selected part of the molecule in MarvinSketch for the calculations;
Manual: The value of the parameter is read from the Value field.
Value : Set a default value for the input parameter (in case of Manual evaluation) or set the parameters for evaluation. Value can be overwritten on the calculation info panel.