On the Browse page previously registered compounds can be viewed with all their details, data and additional data. Different types of structural and non-structural modifications can be performed in order to be saved or just to analyze the structure.
The Browse page has two looks:
Depending on the level (parent, version or lot) the registration system enables different types of modifications:
All the performed changes are stored for each type of amendment in an audit (or history) entry.
In many cases it is allowed to change more than one characteristic in one amendment process.
Table 1 summarizes the main types of amendments for a structure.
structure | CST | salt/solvate | isotope | multiplicity | |
---|---|---|---|---|---|
parent | |||||
version | |||||
lot |
restriction | change MW | update layout | rename LnbRef | register lot | |
---|---|---|---|---|---|
parent | |||||
version | |||||
lot |
move lot | bulk move lot | editing add. data | stereo analyzer | checkers | |
---|---|---|---|---|---|
parent | |||||
version | |||||
lot |
(: modifications affect those levels but the changes cannot be initiated from there)
The Browse page can be opened by clicking the [View Details] from the Registration or Submission page or after entering a compound Id in the Quick Search.
This page visualizes the entire tree for a given compound: parent, version and lot levels. The tree can be configured in a way to display the parent and lot levels only (version level being ignored). At the top of the structure hierarchy the parent standardized form of a compound is displayed. On the next level all versions of the above parent containing isotopes, charges and salt/solvates are shown. The lot (or preparation) level represents the unit of material obtained in one definite chemical process, defined by unique external IDs is at the bottom level of the hierarchy. The tree-like visualization of the Browse page is a direct representation of the storage hierarchy.
In the example below ( Figure Amend 1) a tree is presented on the Browse page for a single compound.
Figure Amend 1. A lot level fused image representation for a single compound on the Browse page |
Independently of the selected level of the tree hierarchy, you can also change the source of the registered entity and by this you can have a different form to fill out.
{primary} Additional data values can be provided, changed or deleted on the Browse page and saved in an amendment process.
{info} Since version 23.12.0 the errors with and without configured fixers are differentiated in the section below the structure editor. The errors with configured fixers are greyed out and tooltips are visible now for all configured checkers.
{primary} Configured fixers might not work for certain structures, for more info please check in the checkers list. Therefore, it might happen, that a manual fix is needed even when a fix is configured. |
Error message about quality checker in _do_notfix mode | Error message about quality checker in fix mode |
Depending on the structure type and from the tree level on the Browse page you can perform different amendments:
Move lot and bulk move lot actions are also available. The allowed structure modifications including amendments and lot movements are summarized in the Table 2.
Type | From | To | Result | Available | Comment |
---|---|---|---|---|---|
Amendment | Single | Single | Parent, Version, Lot | ||
Amendment | Single | Markush | Parent, Version, Lot | ||
Amendment | Single | No structure | Parent, Version, Lot | For parent level available from 23.16 version | |
Amendment | Single | Multi-component compound | Parent, Version, Lot | For parent level available from 24.1 version | |
Amendment | No structure | No structure + CST | Parent, Version, Lot | ||
Amendment | No structure | Single | Parent, Version, Lot | ||
Amendment | No structure | Markush | Version, Lot | For parent level is not allowed | |
Amendment | No structure + CST | No structure | Parent | For parent level available from 24.1 version. It is not possible to remove CST from No Structure compounds for version and lot levels. | |
Amendment | No structure | Multi-component compounds | Version, Lot | For parent level is not allowed | |
Amendment | Markush | Markush | Parent, Version, Lot | ||
Amendment | Markush | Single | Parent, Version, Lot | For parent level available from 24.1 version | |
Amendment | Markush | No structure | Parent, Version, Lot | ||
Amendment | Markush | Multi-component compound | Parent, Version, Lot | For parent level available from 24.1.1 version | |
Amendment | Multi-component compound | Multi-component compound | Parent, Version, Lot | For parent level available from 23.16 version | |
Amendment | Multi-component compound | Single | Version, Lot | Amendment of multicomponent structures is not allowed for parents. New Ids will be assigned | |
Amendment | Multi-component compound | Markush | Version, Lot | Amendment of multicomponent structures is not allowed for parents. New Ids will be assigned | |
Amendment | Multi-component compound | No structure | Parent, Version, Lot | ||
Move lot | Single | Single | Lot | Available only from lot level. A target version ID should be selected | |
Move lot | Single | No structure | Lot | Available only from lot level. A target version ID should be selected. Available from 23.16 | |
Move lot | Single | Markush | Lot | Available only from lot level. A target version ID should be selected. Available from 23.16 | |
Move lot | Single | Multi-component compound | Lot | Available only from lot level. A target version ID should be selected | |
Bulk move lot | Single | Single | Parent, Version, Lot | Available from all levels, multiple lots can be selected.A target parent ID should be selected. Works only for stereoisomers | |
Bulk move lot | Single | No structure | Parent, Version, Lot | ||
Bulk move lot | Single | Markush | Parent, Version, Lot | ||
Bulk move lot | Single | Multi-components compound | Parent, Version, Lot | ||
Bulk move lot | No structure | No structure | Parent, Version, Lot | Available from all levels, multiple lots can be selected. A target parent ID should be selected. Works for stereoisomers and No structures | |
Bulk move lot | No structure | No structure + CST | Parent, Version, Lot | Available from all levels, multiple lots can be selected. A target parent ID should be selected. Works for stereoisomers and No structures | |
Bulk move lot | No structure + CST | No structure + CST | Parent, Version, Lot | Available from all levels, multiple lots can be selected. A target parent ID should be selected. Works for stereoisomers and No structures | |
Bulk move lot | No structure + CST | No structure | Parent, Version, Lot | Available from all levels, multiple lots can be selected. A target parent ID should be selected. Works for stereoisomers and No structures | |
Move lot | No structure | No structure | Lot | A target version ID should be selected. Available from 24.1 version | |
Move lot | No structure | No structure + CST | Lot | A target version ID should be selected. Available from 24.1 version | |
Move lot | No structure + CST | No structure + CST | Lot | A target version ID should be selected. Available from 24.1 version | |
Move lot | No structure + CST | No structure | Lot | A target version ID should be selected. Available from 24.1 version | |
Move lot | Markush | Markush | Lot | A target version ID should be selected. Available from 23.16 version | |
Move lot | Markush | Single | Lot | A target version ID should be selected | |
Move lot | Markush | No structure | Lot | Available from 24.1 version | |
Move lot | Markush | No structure + CST | Lot | Available from 24.1 version | |
Move lot | Markush | Multi-component compound | Lot | ||
Move lot | Multi-component compound | Multi-component compound | Lot | ||
Move lot | Multi-component compound | Single | Lot | ||
Move lot | Multi-component compound | Markush | Lot | ||
Move lot | Multi-component compound | No structure | Lot | ||
Move lot | Multi-component compound | No structure + CST | Lot |