- Standalone Applications
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- Appendix A. Calculations
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- Instant JChem
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- Simple SDF Exporter
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- Table Standardizer
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- Calculate MolWeight and generate SMILES
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- TanimotoMultiple
- Execute Permanent Query Based On Its Name
- Open existing view in the same dataTree
- Export selection to file
- Generate random resultset from actual resultset
- Form Scripts
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- Connect to an External Database
- Create a New ChemTerm Field
- Create a New Dynamic URL Field
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- Java Plugins
- IJC Plugin Quick Start
- IJC Hello World Plugin
- IJC Plugin tutorial - MyAddField plugin
- IJC Plugin tutorial - MyMathCalc plugin
- IJC Plugin tutorial - Renderer Example
- IJC Plugin tutorial - MySCServer webapp
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- IJC Plugin tutorial - Canvas widget
- Java Plugins and Java Web Start
- Instant JChem FAQ
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- Instant Jchem User Guide
- Markush Editor
- Marvin Desktop Suite
- MarvinSketch
- User Guide
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- Graphical User Interface
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- Marvin OLE User Guide
- Appendix
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- Developer Guide
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- Marvin Desktop Suite - History of Changes
- MarvinSketch
- Plexus Connect
- Plexus Connect - Quick Start Guide
- Plexus Connect - User Guide
- Plexus Connect - Log in
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- Plexus Connect - Exporting Your Data
- Plexus Connect - Export Templates
- Plexus Connect - Browsing in Your Data Set
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- Plexus Connect - Form Editor
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- Plexus Connect - Video Tutorials
- Trainer Engine
- Toolkits and Components
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- Calculators on AWS Marketplace
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- Background materials
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- Generate3D
- Isoelectric point (pI) calculation
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- NMR model prediction
- pKa calculation
- Red and blue representation of pKa values
- Tautomerization and tautomers
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- Chemaxon .NET API
- Chemaxon Cloud
- Chemaxon Synergy
- Chemaxon Synergy User Guide
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- Document to Structure
- JChem Base
- Administration Guide
- Developer Guide
- User Guide
- Query Guide
- Search types
- Similarity search
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- Stereochemistry
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- Tautomer search - Vague bond search - sp-Hybridization
- Standardization
- Hit display-coloring
- Appendix
- Matching Query - Target Examples
- jcsearch Command Line Tool
- jcunique Command Line Tool
- Homology Groups in Markush Structures
- Query Guide
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- History of Changes
- Getting Help and Support
- JChem Choral
- JChem Microservices
- Introduction
- Administration Guide
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- Calculations Web Services
- DB Web Services
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- Structure Manipulation
- Task Manager
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- JChem Microservices FAQ and Known Issues
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- JChem Oracle Cartridge
- JChem PostgreSQL Cartridge
- JKlustor
- Markush Tools
- Marvin JS
- User Guide
- Getting Started
- Editor Overview
- Editor Canvas
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- User Guide
- Marvin
- Name to Structure
- Reactor
- Reactor User's Guide
- Introduction to Reactor
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- Specifying Reactions
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- Reactor in Instant JChem
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- Reactor in KNIME
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- API, Web Services
- Glossary
- Reactor FAQ
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- Screen
- Standardizer
- Standardizer User's Guide
- Standardizer Introduction
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- Standardizer Concepts
- Working with Standardizer
- Standardizer Actions
- Add Explicit Hydrogens
- Alias to Atom
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- Aromatize
- Clean 2D
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- Create Group
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- Expand S-groups
- Expand Stoichiometry
- Map
- Map Reaction
- Mesomerize
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- Remove Absolute Stereo
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- Creating a Configuration Standardizer
- Interfaces Standardizer
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- Standardizer Developer's Guide
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- Standardizer Licensing
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- Structure Checker
- Structure Checker User's Guide
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- Multicenter
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- Pseudo Atom
- Query Atom
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- Racemate
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- Relative Stereo
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- Ring Strain Error
- Solvent
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- Stereo Care Box
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- Straight Double Bond
- Substructure
- Three Dimension 3D
- Unbalanced Reaction
- Unused R-group Reference
- Valence Error
- Valence Property
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- Wiggly Bond
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- Creating a Configuration Structure Checker
- Interfaces of Structure Checker
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- Structure Checker Developer's Guide
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- Structure to Name
- Third-Party Integration
- JChem for Office
- Before Using
- Supported Versions
- Installation
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- Diagnostic Tool
- JChem for Excel User's Guide
- JChem for Excel Ribbon
- Working with Structures in Excel
- Add a Structure to a Cell
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- Resize Structures
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- Insert Single Structures
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- Delete Structures from a Selected Range
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- Print Structures
- Copy and Paste with JChem for Excel
- Convert from Structures
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- Convert ISIS, ChemDraw, Accord, and Insight for Excel Files to JChem for Excel Files
- Calculations with Third-Party Services
- Specify External Image and Name Services
- Importing from Databases in JChem for Excel
- Manage Connections
- Add an Oracle Connection in JChem for Excel
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- Favorite Entities in JChem for Excel
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- R-group Decomposition in JChem for Excel
- SAR Table Generation
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- Options in JChem for Excel
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- Image
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- Checking DirectX Information
- JChem for Office User's Guide
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- Manage Connections in JChem for Office
- Add an Oracle Connection in JChem for Office
- Add a MySQL Connection in JChem for Office
- Add an MSSQL Connection in JChem for Office
- Add a PostgreSQL Connection in JChem for Office
- Add a JChem Web Services Connection in JChem for Office
- Favorite Entities in JChem for Office
- Edit and Delete Connections in JChem for Office
- Import from Database in JChem for Office
- Import from IJC Database
- Manage Connections in JChem for Office
- Import from File in Jchem for Office
- Options in JChem for Office
- Properties in JChem for Office
- Switching JChem for Office to Lite Mode
- JChem for Office Lite User's Guide
- JChem for Office Known Issues
- JChem for Office History of Changes
- Troubleshooting - JChem for Office
- Structures are not displayed in Excel cell
- JChem for Office Tutorial Videos
- Enable JChemExcel.Functions add-in after it gets disabled
- Structure rendering issues when moving the Excel window between different screens
- How to collect event logs
- Information to be sent for bug investigation
- Logfiles to be sent for bug investigation
- KNIME Nodes
- Pipeline Pilot Components
- JChem for Office
- Cross-Product Documentation
- Chemaxon Configuration Folder
- Chemical Fingerprints
- Chemical Terms
- File Formats
- Basic export options
- Compression and Encoding
- Document formats
- Graphics Formats
- Molecule file conversion with Molconverter
- Molecule Formats
- CML
- MDL MOL files
- Daylight SMILES related formats
- Chemaxon SMILES extensions
- IUPAC InChI, InChIKey, RInChI and RInChIKey
- Name
- Sequences - peptide, DNA, RNA
- FASTA file format
- Protein Data Bank (PDB) file format
- Tripos SYBYL MOL and MOL2 formats
- XYZ format
- Gaussian related file formats
- Markush DARC format - VMN
- CSV
- Input and Output System
- License Management
- Long Term Supported Releases - LTS
- Notice about CAS Registry Numbers®
- Public Repository
- Scientific Background
- Structure Representation
- Structure Representation - Class Representation
- Aromaticity
- Implicit, Explicit and Query Hydrogens
- Assigning stereochemistry descriptors
- Cleaning options
- Deprecated and Removed Methods
- Relative configuration of tetrahedral stereo centers
- Iterator Factory
- Atom and bond-set handling
- Graphic object handling
- Supported Java Versions
- Legal
- Discontinued Products
- Document to Database
- Fragmenter
- JChem Neo4j Cartridge
- JChem Web Services Classic
- Markush Overlap
- MarvinSpace
- MarvinSpace User's Guide
- MarvinSpace Developer's Guide
- MarvinSpace History of Changes
- Metabolizer
Chiral Flag Error
-
Checker searches for incorrectly set chiral flags: "Absolute" flag can only be set when all chirality information is specified for the given molecule.
-
Fixer offers removing the chiral flag (
removeinvalidchiralflag).Chiral Flag Error Checker ( chiralflagerror)Warning: Fix Fix Chiral Flag ( removeinvalidchiralflag)Detect invalid chiral flag 
ex_chiralflag_ch
ex_chiralflag_f